I think it is obvious that red john is not on the list. I mean every episode Jane is ahead of us performing some kind of trick. the capture of Red john will be no different. Yes, bruno helller said we could trust the list  but he didn't specify what list or say that there was only 1 list. I definitely think the explosion is a trick. its possible that jane believes red john will try to kill hem off because they are on his(rj) list. Therefore, jane is faking their deaths to protect them.